Your problems are why I do not use or recommend filing jigs.
Clamp the blade to a board and file by hand.
If you have a grinder, learning to free-hand grind is a skill you will need to make knives ... learn from the start. The filing jig will just set you back.
Good advice to new and old knifemakers:
Whatever method you use to shape your knives, using Dykem lay-out fluid or a wide-tip black sharpie to darken the blade and make your progress easy to see is a good method when learning. Actually, it is a good method anytime. I still do that when I am working on an exact bevel or clip. If you plan on making more than a few knives, a brush-on can of Dy-chem will pay for itself many times over in better bevels and profiles. I like the brush on fluid, as the spray can wastes too much on a small object like a knife blade. Dy-chem is also good for marking the blade profile on the steel for shaping and cutting. I use a carbide scriber for marking, but a 1/4" piece of steel, ground to a point and hardened, will work fine.
Another big tip is to use a white paint marker to write on steel bars, and draw profiles. A black sharpie marker will fade and/or rub off quickly. The white shows really well on the blue Dykem. These markers come in a fine tip that is perfect for drawing lines, as well as a regular tip for marking bars.
You can mark the steel type, customer name, HT temp, etc. on the tang, draw the bevel and clip lines, mark holes, etc. If you change your mind about something, just wipe off with a solvent and redraw the line.
One BIG plus of a white paint marker is that the white marks stay on bare steel, and even after HT will still show up as black writing. The white pigment is titanium dioxide, which lasts well beyond our HT temps. After HT, you have to grind it off. After each grinding session, I re-mark the tang so I know which steel and job it is.
Mark your steel stock!!!! I use the white paint marker to mark every bar of steel on both sides of both ends. If I cut a piece off, I mark the cut end immediately. I have quite a few bars of steel from the years before I started doing this that I have no idea exactly what it is. Mark your steel the moment it arrives and every time you cut some off. Mark the blade again as you grind/file it. Don't be like most of us old guys with a box of nice blade blanks that are " some kind of steel". When I laid it down or put it in a project box, I knew what it was. A month (or year) later, Hmmm???