Apple cider vinegar is great for forcing a patina, but two days is a long time. Like John said, you’d normally heat the vinegar and dip the knife in it for a few minutes, not days.
You say it had more rust than it had before. Were trying to force a patina, or remove rust that was already on the blade? I guess vinegar could maybe be used to remove rust, but again, two days is about 1 day, 23 hours and 55 minutes too long.
I never bother with removing patina from 1095 — I like it, and prefer letting it do its thing — but rust is another matter. I’d do something about the rust from his blade, or it’ll just get worse.