The stop pin looks to be be perfectly cylindrical and not keyed (at least on my OD-1). Re-positioning it (or checking to make sure it's completely seated in the handle liners) may help.
Also, check the alignment of the two handle scales. If it was slightly misaligned while re-assembling such that the frame lock side was just a bit higher, then you may need to shift things a little. This might also result in the blade being off-center towards the locking side when closed. To re-align, you can use the same folded paper trick as for centering the blade. Loosen all the handle screws and the pivot screw, wedge some paper on one side between the blade and handle scale, and re-tighten the screws. In your case, wedge the paper on the left side (between the blade and locking side).