A few answers for ya:
thinning out your knife will improve it, for the most part. The advantage of the Edge Pro is its versatility. Keep thinning out your knife until in actual usage you get chipping, then thicken the sharpening angle a bit, so that you are as thin as you can go but as strong as you need to be for your usage. You'll probably find that the knife slices better, push cuts better, and stays sharp longer. A sharper edge uses less force to cut through stuff, so it stays sharp longer, typically.
If you want to match factory angles, paint the edge bevel with a magic marker, put on the fine stone, try to match the angle perfect by eye, and take a small swipe dry. If you hit the angle perfect, then the black will be removed evenly. If you are too shallow, the "top" of the edge bevel will have the black removed, but there will still be black on the "bottom" part of the edge. If you are too obtuse on your angles, then the "bottom" of the edge will be shiny (black removed), while the "top" of the edge will still be black.
Or, just say screw it and reprofile all of your knives. It helps to keep a small notepad with your Edge Pro to mark where you sharpen your knvies at. That way when your EDC needs a touch-up, you can look it up and see that you sharpened at green and put a microbevel on the next notch up.
One thing you might want to try is using the Edge Pro to put a main bevel of less than 15 degrees per side, and then put on a microbevel and maintain it using the sharpmaker at the 15 degree setting.