Yes, I've lapped/leveled several of my stones over the years. I use a flat area of concrete and plenty of H2o. I don't take it any finer than this as glazing can and does occur. You can take this glazing off by careful grinding back on the concrete. Also, try to save some of the slurry you see left on the concrete, to later apply on a strop. This really helps clean up the edge. I did take my Spyderco ceramic stone finer, by using a fine diamond on it.
For the final leveling. I think I've needed to level my large Norton SiC stone about 3 times over the last 8 years (which is a water stone). But the India has different binders and it has only needed leveling once over the last 30+ years. DM