Watch the DVD, then watch the DVD again, call Ben Dale (he's a talker and all around good guy)
If you want to find out what a burr is, get a $1 knife at walmart, put on your coarse stone, set the angle to blue (24°) and start working, chances are in a couple minutes or less (depending on how much pressure you apply to the stone) you'll be able to feel the burr and see it.
I don't worry about marker on my blades because I don't need it anymore, but to be helpful, simply use the marker only on the bevel.
Removing the burr, green polishing compound works like a charm, apply it to whatever medium you desire, from your pants leg to a piece of paper, the key is technique and a very light touch.
Tips, take your time, and on user knives I don't tape the table.
Get a couple extra suction cups, get a few extra coarse stones, a couple extra medium stones and an extra fine stone.
600 grit is what I think is a great grit for EDC knives, I usually pop the angle just below the colored markers on the angle guide to accommodate using the ceramic hone, which is 1,200 grit and quite handy to keep in the kitchen.
Mirror polished edges can become an obsession, get a couple paint stick and a few extra stone blanks, some 2,000 grit sandpaper and a flat surface, plane the paint sticks and apply whatever micron polishing compound to the paint sticks.
The tips and tricks to using the system abound, from experience though I can tell you that it can handle hatchet heads, machetes and the only thing that is still hard for me is tiny blades, like those found on SAKs.