Take a piece of thin wood or plastic and make a template. Once it fits the bolsters right, transfer to the scales and cut slightly oversize on the ends.
Mark the tempale "V" on the scales such a way that the excess scale wood is on the wide (top) side. This allows sneaking up on the wedge fit as you trim the ends. I shape one end so it is staright and square along the template line, and only trim from the other end as I fit the wedge. The wedge will slowly lower into the space as the end gets reduced
If you have a small 6" disc sander with a 90 degree table, that is a good trimming tool. If it is VS, even better. Trim by hand one file stroke at a time as you get close.
Don't worry about the excess on the top and bottom until the ends fit right. Even then leave some extra to allow any slight adjustment if needed.
Once it fits in place solidly, I clamp one scale firmly in place, and drill through from the other side to mark the screw/pin holes. Repeat with the other side. Finish as normal from there and assemble.
TIP:
Sooner or later there will be some sort of alignment problem after all is drilled and fitted. A gap will suddenly show up on the assembled knife. This can cause bad words to come out of your mouth. While tearing it apart and starting over again will work, try this -
Make a colored spacer to fix the gap ( I like red or black). Take a razor saw and carefully cut down between the scales and the bolsters. Use a blade that is the size of some spacer material ( vulcanized fiber is fine here). If necessary repeat with a wider saw blade like a hack saw blade that has had the set ground off the teeth (the sides sanded/lapped flat). Cut four oversize strips of the spacer material with one straight edge (for the bottom). Rub epoxy on the spacer strips and in the gap, then slide the strips in the gap with the straight side down. Let cure fully overnight and sand them down flush. The end result is a very nice colored line on each end of the scale.