Generally with fold over type sheaths, the blade moving is more of a problem because somehow the person doesn't push the spine of the blade right into the fold and then when they try to close it, it moves. To solve this problem for me, I didn't glue the top piece of foam on (which I got a knifekits.com) and I put the top piece on when I know my right hand has the knife and the now folded over sheath nicely in place, put the 2nd piece of foam on and close the hinged over type ghetto sheath press of mine (made of 2 pieces of 1 inch thick plywood with two hinges (estimated cost 5 bucks).
I would think a two piece type sheath would not have the knife migrating problem?
The better and deeper the impression you get into the kydex from the shape of the knife, the easier it is to drill the holes and match them back up after you've shaped the sheath.
I prefer to do all shaping of the sheath and any activity that would cause more crap to get stuck in the sheath all before I rivet anything together.
And until you get good at doing this, don't be cheap with the kydex. The more you have on both ends, the easier it is to do. Obviously at some point too much becomes annoying and unhelpful.