As far as POLISHING STONES go, don't you use those on the blade itself to remove micro scratches like this? Am I doing something wrong? I admit there is a lot I don't understand when it comes to the fine tuning of knives. If you have a collection of stones you'd use the more abrasive lower grit number to sharpen until you hit high grit stones like 1000 grit to polish the entire knife including the edge? Is Flitz abrasive to some degree allowing the polishing of knives?
You have a partially convex ground knife. To properly maintain such a knife, you should grind the blade aswell, not just the edge. It's ok to just sharpen just the edge, if you're in field and need to put on an working edge quickly. However you shouldn't do this very often, otherwise you'll end up with a very poor cutting geometry. Ideally you want a continuous curve from the point, where the main grind starts right down to the very apex of the edge without any steps.
Flitz works well for polishing unless you have very deep scratches. If you want to remove deep scratches, I'd recommend starting with sandpaper and work your way up. Personally, I don't care about scratches on my blade, but i understand that some people do and it's your choice if you want to spend the time to remove them.
Here are some ways to maintain your convex ground blades on stones:
From about 13:00
And here's the method using soft backing and sandpaper: