Hmm..let me see if I can help you out a bit..
Making a yokote is not the easiest thing ting in the world to do..
and describing it by mail is even more difficult..but I will try to describe it in very broad terms...here goes...
In very simple teams the yokote appears because the is a change of angle from the ji to the kissaki, thats why on a sword with a ko-kissaki the yokote is very defined whereas on a sword with an o-kissaki it is much less defined.
Sometimes when you don't have any steel to "work" with you "draw" it in instead.
You make the yokote in the first one or two stages in shitaji-togi.
If you start from the ji, you imagine the yokote and "hit" that spot every time, it may be that your imaginary yokote and the actual yokote don't quite match...
Lets say that your "real" yokote is above where it should be , you would then work from the kissaki and bring it down, then you would work from the ji again and refine it a bit more, then from the kissaki again..and so on untill you have a clear and well defined yokote that is in the correct place.
Ofcause you cant just grind away..you always have to think about the "niku" in the kissaki and in the ji and the "mitsukado and the ko-shinogi and, and.. I think you get the picture.
One more thing is, if you make the yokote too pronounced, when you try to bring out jigane under the yokote, you will have a very difficult time...
Since the yokote is ever so slightly "higher" the the area below it, you will hit the yokote instead and not bring out any jigane..not easily anyway.
Hope I have helped you out a wee bit?
Just in case you wonder how I know this, well I spent 9 1/2 years learning it from one of the top polishers here in Japan..and believe me that is a long time..

But at least I finished and I did win a number of prizes in the yearly sword polishing competition...( a bit of shameless self promotion

)