Yes, but that doesn't change the grit size of the waterstone, it only changes the appearance of the stone, and after a short bit of sharpening, that smooths out too. Look at a 1000 grit waterstone after it's been flattened on a 220 grit flattener, or as most commonly found, 60-80 grit flatteners. The stone is actually scored quite a bit. But it doesn't affect the sharpening qualities of the stone. Now imagine what a 220 grit flattener does to a 12,000 grit stone... Microscopically, valleys, gouges, and canyons left in the stone, but to a knife blade, it's just fine.
When you sharpen a curved blade, the edge is only contacting a small part of the stone at one time. When a stone is rougher than its grit (as almost ALL stones are after flattening, even on a 220 grit flattener) the blade only contacts the stone in small parts too. Quite bumpy compared to the grit size. But the only thing that results is that it might take one more stroke to achieve the final results. Perhaps two strokes.
Stitchawl