It depends on what the material is. Bottoming taps are normally only used for finishing the last few threads in a hole that's already been tapped as deep as possible with a plug tap. On very soft material like plastic, brass or aluminum you might get away with it, but tougher material will give trouble.
There are three varieties of tap - taper, plug and bottoming. The only difference is the amount of tapered relief ground at the end of the tap. Bottoming taps usually have almost none so that they can thread nearly to the bottom of a blind hole. A plug tap will have tapered relief for around 4 threads and a taper tap might have double that.
What that accomplishes is basically allowing a sort of gradual cut, with the first taper ground tooth removing very little material and each following tooth taking a little more material. At the end of the taper, the first full tooth finishes the thread, and the rest of the full teeth should do nothing but follow the existing thread.
All of that said, in the machine shop we mostly used plug taps for everything. If we needed a blind hole threaded all the way to the bottom (not very often, usually we were able to drill the hole a little deep and just use the plug tap to full thread depth) we'd put a bottoming tap in by hand and finish the threads at the bottom of the hole.