Now that I've thought about it for a minute...
I would just plan on re-polishing the scales. The tang is no big deal at all. However you finished it, it'll be a matter of a few minutes to restore it after glue up. Just get as much of the epoxy off the tang as possible while it's still soft. Don't just wipe it off once and be done with it. Check on it periodically as epoxy will seep out as it cures. Popsicle sticks are all great idea. A scrap of micarta or g10 or wood will work too.
You probably already know, but ideally, you want the area of the scales that fit against the ricasso finished because it'll be hard to do after the fact without damaging the finish of the ricasso. That's not just something I read btw. I know because I've done it.
I've done a few scales on blanks. I get the perimeter close to fitting flush with the tang all the way around, finish the front of the scales, then glue/clamp. After it cures I shape the scales and finish them.
Tang prep, that is, drilling any extra holes for "epoxy rivets", roughing the surface, making a "trough" on the face of the tang to insure space for epoxy and roughing the inside of the scales, (plus extra divots, etc) and finally, mechanical fastening, should all be planned out, and even practiced, before glue up. Wet sanding the epoxy against the tang is a good idea too.
Unless you've already looked at it carefully, check out The Weatherman(s) recent thread on how to do scales on a Spyderco Mule. Some very sound advice in there.
Here's a pic of my last glue up.
Light pressure from whatever clamps you are using is advised. Because there are liners on that one, holes were drilled through them and into the scale material being careful to not drill so deep as to have any of the holes inadvertently exposed while grinding/shaping.
Hope that helps some. If you explain a little more about what you're up against it'll help the guys that do this on a daily basis (not me haha) to better help you.
Good luck and have fun! That part of the process is my very favorite, mostly because it means that you're almost finished.
