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- Nov 9, 2005
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Of course when cutting sections for electron microscopy (50-100 nm thick slices) one uses either a diamond knife or a glass knife with a freshly-broken edge. The samples being cut are typically pieces of animal or plant tissue that have been fixed (that is, treated with a cross-linking agent such as gluteraldehyde that generates covalent bonds throughout the tissue). After fixation the samples are embedded in an epoxy resin. So you have a network of biological polymers (proteins, complex carbohydrates) embedded within a matrix of synthetic polymers. In this case the sample will certainly contain be filled with individual organic molecules that are in the range 10-100 nm and larger. For example, even before crosslinking single collagen molecules are >100 nm long, and single DNA molecules can be a few cm long.
Given that smooth-surfaced (<10 nm rmsd), 50 nm thick sections are cut routinely, we have to conclude that a major mechanism of cutting in this application is the severing of covalent bonds by the glass or diamond edge. The major mechanism would be mechanical stretching and breakage of covalent bonds which for organic molecules occurs roughly over the 100-1000 pN range.
Given that smooth-surfaced (<10 nm rmsd), 50 nm thick sections are cut routinely, we have to conclude that a major mechanism of cutting in this application is the severing of covalent bonds by the glass or diamond edge. The major mechanism would be mechanical stretching and breakage of covalent bonds which for organic molecules occurs roughly over the 100-1000 pN range.