You probably have had shrinkage like this, but most of your other work hasn't included a steel yardstick against which to measure it. Even Micarta shrinks, and stabilised wood is not immune. How you cut your scales and letting them stabilise to the atmosphere they will be stored in before glue-up will help. Cutting slabs from a larger seasoned plank that was stored in your workshop and immediately gluing them to a tang, with the rings running top to bottom, finishing, then bringing it indoors is the way to see max shrinkage.
Various hardwoods, same you use for furniture or something new? Some wood takes longer than others to air dry. Tropical hardwoods often take a long long while. Turning blanks are often sold a lot higher MC than you want for knife scales.