I baton every one of my fixed blades knives, so yes I would. By using my blades regularly I get a feeling for what they can do. In the field and under survival situations I'd be a little more cautious in the jobs I take on, but that wouldn't stop me from batoning. If you do the activity often enough you get a good feeling about when wood is going to give you a hard time or not. It is just as easy to make your decision to stop batoning when you feel that you are dealing with a stubborn piece of wood. Why go so far as to refrain from using your knife that way in the first place?
Anyhow, using YOUR knives (not just basing it on some test you saw on the same model of knife that you have), but actually hammering away at your own knives under regular activity should give you a feeling about their relative ability to take on punishment. I try not to buy knives that I can't fully depend on. When I get one I make sure it lives up to that claim. I'd rather have it break in my backyard or out on a dog walk playing around than when I really need it. If it has bad heat treat, I want to know before I take it on a trip. I don't do this to try and make a warranty claim, or abuse a warranty claim. I do it so I can understand how the chunk of steel in my hand performs and whether it meets my expectations.