Apart from obvious stainless properties (Spyderco made a salt knife from MagnaCut) there is a potential to make a better cutting tool using MagnaCut instead of 3V.
I have not received my MagnaCut mule yet or had extensive D3V use experience (my behemother sitting in a drawer until I get access to some woodland), but in theory, MagnaCut will make a better cutting knife. This is not only because it has higher edge retention, but it is quite tough (perhaps tougher than 3V) at high hardness (62+). So it will not roll or chip under normal use when ground thin.
The carbide content (i.e. volume fraction) of MagnaCut is also twice as high as 3V (5 % vs 10 %) which is the reason for increased abrasive resistance. When the increased abrasion resistance, higher hardness of steel matrix and the thinner geometry is combined, the resultant blade made of MagnaCut will be a much better cutting tool compared to a knife made from 3V with a softer steel matrix and thicker grind. It will also take a keener edge (due to thinner grind) and will hold that edge longer (due to abrasion resistance or edge stability depending on what you are cutting with it).
Assuming two knives optimised for their respective steels, the one made of MagnaCut would slice better than the 3V knife since the 3V knife does not get as hard without losing a significant amount of its main advantage (i.e. toughness). So, a 3V knife can not be as thin as a MagnaCut knife. On the other hand, thin and hard MagnaCut knife can not be as durable as 60.5 HRC D3V knife with a thicker geometry.
If Nathan makes the MagnaCut DEK1 exactly the same as D3V DEK1 (i.e. same geometry and hardness), there will not be much point (in my opinion) buying the MagnaCut one unless you prioritise corrosion resistance over toughness. Yes, MagnaCut will have more abrasion resistance, but with a significant penalty on toughness. But, still, I do not think MagnaCut DEK1 with the same hardness and geometry as D3V DEK1 would be a fragile knife given that neither the grind on DEK1 is extremely thin nor MagnaCut is a fragile stainless.
So the takeaway point would be if both 3V and MagnaCut share the same hardness and geometry (i.e. the properties optimised for 3V) it is personal preference which one to buy (stainless over toughness or another way around). But if MagnaCut is hardened to 62-63 HRC and ground thin (10 tho or less TBE), I would pick MagnaCut DEK1 over D3V DEK1 any day of the week.